It does disable the start/stop system, like I said there are two options in BdyCM, BMS, and BMS Start/Stop, this is where you disable start stop and it works. I've been running with it for almost a week and start/stop does not engage. I disabled both, but I'm going to revert BMS while keeping BMS Start/Stop off. Only caveat with that when you start the vehicle it briefly complains about the battery charging system when BMS is engaged and BMS start/stop is off. I'll see if I can find the option for that some where else though.
The reason I'm gonna turn BMS back on is because the B billar touch keys don't come on with BMS disabled.